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Cheap flight tickets from Tokyo to Nagasaki

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Compare Tokyo to Nagasaki flight deals

Find the cheapest month or even day of the year to fly to Nagasaki

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Flight deals from Tokyo to Nagasaki

Looking for a cheap last-minute deal or the best return flight from Tokyo to Nagasaki? Find the lowest prices on one-way and return tickets right here.
Nagasaki.RM352 per passenger.Departing Thu, 26 Jun, returning Mon, 30 Jun.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Thu, 26 Jun, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Mon, 30 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From RM352, select.
Nagasaki.RM352 per passenger.Departing Tue, 14 Oct, returning Sat, 18 Oct.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Tue, 14 Oct, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Sat, 18 Oct, arriving in Tokyo Narita.Price includes taxes and charges.From RM352, select.
Nagasaki.RM384 per passenger.Departing Tue, 8 Jul, returning Thu, 10 Jul.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Tue, 8 Jul, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Thu, 10 Jul, arriving in Tokyo Narita.Price includes taxes and charges.From RM384, select.
Nagasaki.RM386 per passenger.Departing Wed, 25 Jun, returning Tue, 1 Jul.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Wed, 25 Jun, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Tue, 1 Jul, arriving in Tokyo Narita.Price includes taxes and charges.From RM386, select.
Nagasaki.RM388 per passenger.Departing Mon, 1 Sep, returning Wed, 3 Sep.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Mon, 1 Sep, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Wed, 3 Sep, arriving in Tokyo Narita.Price includes taxes and charges.From RM388, select.
Nagasaki.RM408 per passenger.Departing Wed, 5 Nov, returning Tue, 11 Nov.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Wed, 5 Nov, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Tue, 11 Nov, arriving in Tokyo Narita.Price includes taxes and charges.From RM408, select.
Nagasaki.RM410 per passenger.Departing Tue, 30 Sep, returning Wed, 1 Oct.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Tue, 30 Sep, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Wed, 1 Oct, arriving in Tokyo Narita.Price includes taxes and charges.From RM410, select.
Nagasaki.RM451 per passenger.Departing Wed, 28 May, returning Wed, 4 Jun.Return flight with Jetstar Japan.Outbound direct flight with Jetstar Japan departs from Tokyo Narita on Wed, 28 May, arriving in Nagasaki.Inbound direct flight with Jetstar Japan departs from Nagasaki on Wed, 4 Jun, arriving in Tokyo Narita.Price includes taxes and charges.From RM451, select.

Find the cheapest month to fly from Tokyo to Nagasaki

We’re always keeping an eye on fares, so you can find the best one in seconds. It looks like Tokyo to Nagasaki flights are currently cheapest in June.
May
from RM462
Jun
from RM352
Jul
from RM384
Aug
from RM474
Sep
from RM388
Oct
from RM352
Nov
from RM408
Dec
from RM573
Jan
from RM555
Feb
from RM550
Mar
from RM957
Apr
from RM865

Direct flights from Tokyo to Nagasaki

Tokyo to Nagasaki: Alternative routes

Compare routes from Tokyo to Nagasaki below. You may find an airport to fly into that's cheaper, faster, or easier than Nagasaki.

Tokyo to Nagasaki: Flight information

The things to know before you go.
Cheapest flight foundRM352
Cheapest month to flyJune
Average flight time2 hrs, 7 mins
Most popular airlineANA (All Nippon Airways)
Average flights per week596

Finding cheap flights from Tokyo to Nagasaki: Frequently asked questions

The best price we found for a return flight from Tokyo to Nagasaki is RM352. This is an estimate based on information collected from different airlines and travel providers over the last 4 days and is subject to change and availability.
2 hours and 7 minutes is the average flight time from Tokyo to Nagasaki.
ANA (All Nippon Airways), Solaseed Air and Japan Airlines fly direct from Tokyo to Nagasaki.
As of May 2025, there are 596 flights per week flying from Tokyo to Nagasaki.
The cheapest month to fly from Tokyo to Nagasaki is usually May 2025.
After crunching the numbers on our flight calendar, we found that it is currently cheapest to fly from Tokyo to Nagasaki Airport on Thursday, 26 June 2025.
Yes – the average flight time is 2 hours and 7 minutes.
We show every price from over 1,200 airlines and travel agents, comparing them all so you don’t have to. If you know you want to fly to Nagasaki but you’re not ready to book, set up a Price Alert. We’ll track prices for you, and let you know when they rise or fall.
We crunched all the numbers in our flight calendar and it looks like the cheapest time to book a flight to Nagasaki is around 40 days in advance, so don’t leave your flight to the last minute.
The cheapest airline that flies to Nagasaki is Jetstar Japan .

Travelling from Tokyo to Nagasaki Airport (NGS): what you need to know

  • Start your journey at one of Tokyo's main airports, Haneda Airport (HND) or Narita International Airport (NRT). Explore your options for booking a flight from Tokyo to Nagasaki Airport (NGS) departing from either of these.

  • 1 hour 56 minutes is the average duration of a direct flight from Tokyo to Nagasaki Airport.

  • Nagasaki (where Nagasaki Airport is located) and Tokyo share the UTC+9 timezone. You'll have no time difference to factor in for your trip.

  • Haneda Airport (HND) to Nagasaki Airport (NGS) is the most popular route. There are 112 direct weekly flights to pick from. If you prefer starting your day later, take the last flight with Japan Airlines at 19:30. Go for the first HND to NGS departure with ANA (All Nippon Airways) at 07:05 if you want to get going earlier.

  • Leave enough time to make your flight from Tokyo to NGS. As a general rule, turn up two hours before international departures and an hour ahead for domestic flights.

  • During popular months such as June, you'll want to get to the airport earlier. Plan to arrive two hours before a domestic departure and four hours ahead for international flights whenever you're flying during high season in general.

Airports in Tokyo

Haneda Airport (HND)

  • Haneda Airport (HND) will have you travelling directly to your destination. Nonstop flights from Tokyo to Nagasaki Airport (NGS) leave from this terminal.

  • You can travel on a direct flight from Tokyo to Nagasaki Airport with Japan Airlines. This top airline operates departures from HND.

  • From the centre of Tokyo, HND is approximately 16 kilometres away. Use navigation apps or visit the official airport website to find the best way to get there.

  • Planning to catch an early flight from Tokyo to Nagasaki Airport? Avoid the hassle of rushing to the terminal (and enjoy a little extra shut-eye) by picking one of these stays near Haneda Airport:

Narita International Airport (NRT)

  • Looking for other options for a direct flight from Tokyo to Nagasaki Airport (NGS)? Browse the fares leaving from Narita International Airport (NRT).

  • Jetstar Japan offers direct flights from Tokyo to NGS departing from NRT. Book your favourite aisle seat and arrive at your destination without any detours.

  • The drive from central Tokyo to NRT usually takes 58 minutes, depending on traffic. It's approximately 64 kilometres from the city centre to the airport.

  • Want to spoil yourself with an extra night away before catching your flight from Tokyo to NGS? Kick back in a hotel near Narita International Airport before your adventure officially begins. Consider one of these stays:

About Nagasaki Airport (NGS)

Getting from Nagasaki Airport (NGS) to central Nagasaki

  • Nagasaki Airport to central Nagasaki takes around 44 minutes in a car. It's approximately 32 kilometres away. Discover what options are available, such as cabs, car rentals or ride-sharing.

How to find the cheapest flights from Tokyo to Nagasaki Airport (NGS)

  • The lowest price we've seen for a one-way ticket from Tokyo to Nagasaki Airport is RM162. The cheapest price for a return flight is RM352. Remember fares can change due to availability at the time of booking.

  • It's usually best to book as early as possible if you want to find cheap tickets from Tokyo to NGS. That's because airlines adjust prices based on demand, which tends to rise closer to the date of departure.

  • Getting cheap tickets from Tokyo to Nagasaki Airport is more likely if you can be flexible with your dates. Use the 'Whole month' function to see the best prices across every month and bag a great deal.

  • Create a Price Alert for cheap tickets from Tokyo to NGS. There's no need to search every day to see whether fares have dropped. We'll notify you the moment there's a change in price.

  • Customise your journey by applying filters. Choose the duration, number of stops, and arrival and departure times to find the right flight from Tokyo to Nagasaki Airport. You can also sort the results to see the 'Best,' 'Cheapest' or 'Fastest' options first.

The best time to fly from Tokyo to Nagasaki Airport (NGS)

  • June is the busiest month for flights from Tokyo to Nagasaki Airport. To avoid the crowds, head for Nagasaki in February when it's quieter.

  • Before booking a flight from Tokyo to NGS, think about the type of weather you enjoy. August is the warmest month in Nagasaki, with the temperature ranging from 24ºC to 29ºC.

  • Visit in January for cooler conditions. Average temperatures range between 5ºC and 11ºC. However, this city promises a good time whenever you book your cheap flights from Tokyo to Nagasaki Airport.

More about Nagasaki

  • When it comes to looking for somewhere to rest your head, you'll find the top stays in Nagasaki right here. Browse these hotels as soon as you've booked your flight from Tokyo to Nagasaki Airport:

  • One of the best ways to get to know Nagasaki is to explore its top sights. Highlights include トトロのバス停, Utsutsugawa Forest Park and Omiya Park.

Complete your Nagasaki trip with a car rental

  • After you've locked in your hotel and cheap flight from Tokyo to Nagasaki Airport, the next task is choosing one of our car rentals in Nagasaki. Explore the deals and easily compare your options on pick-up convenience, price, and more.

More travel options

Plan the rest of your trip from Tokyo to Nagasaki

Prices shown on this page are estimated lowest prices only. Found in the last 45 days.